Stanley Nelson

Nyman Emma S, Loukola Anu, Varilo Teppo, Taanila Anja, Hurtig Tuula, Moilanen Irma, Loo Sandra, McGough James J, Järvelin Marjo-Riitta, Smalley Susan L, Nelson Stanley F, Peltonen Leena   Sex-specific influence of DRD2 on ADHD-type temperament in a large population-based birth cohort. Psychiatric genetics, 2012; 22(4): 197-201.

Cabrera Paula V, Pang Mabel, Marshall Jamie L, Kung Raymond, Nelson Stanley F, Stalnaker Stephanie H, Wells Lance, Crosbie-Watson Rachelle H, Baum Linda G   High throughput screening for compounds that alter muscle cell glycosylation identifies new role for N-glycans in regulating sarcolemmal protein abundance and laminin binding. The Journal of biological chemistry, 2012; 287(27): 22759-70.

Bonnard Carine, Strobl Anna C, Shboul Mohammad, Lee Hane, Merriman Barry, Nelson Stanley F, Ababneh Osama H, Uz Elif, Güran Tülay, Kayserili Hülya, Hamamy Hanan, Reversade Bruno   Mutations in IRX5 impair craniofacial development and germ cell migration via SDF1. Nature genetics, 2012; 44(6): 709-13.

Arboleda Valerie A, Lee Hane, Parnaik Rahul, Fleming Alice, Banerjee Abhik, Ferraz-de-Souza Bruno, Délot Emmanuèle C, Rodriguez-Fernandez Imilce A, Braslavsky Debora, Bergadá Ignacio, Dell'angelica Esteban C, Nelson Stanley F, Martinez-Agosto Julian A, Achermann John C, Vilain Eric   Mutations in the PCNA-binding domain of CDKN1C cause IMAGe syndrome. Nature genetics, 2012; 44(7): 788-92.

Wan Jijun, Yourshaw Michael, Mamsa Hafsa, Rudnik-Schöneborn Sabine, Menezes Manoj P, Hong Ji Eun, Leong Derek W, Senderek Jan, Salman Michael S, Chitayat David, Seeman Pavel, von Moers Arpad, Graul-Neumann Luitgard, Kornberg Andrew J, Castro-Gago Manuel, Sobrido María-Jesús, Sanefuji Masafumi, Shieh Perry B, Salamon Noriko, Kim Ronald C, Vinters Harry V, Chen Zugen, Zerres Klaus, Ryan Monique M, Nelson Stanley F, Jen Joanna C   Mutations in the RNA exosome component gene EXOSC3 cause pontocerebellar hypoplasia and spinal motor neuron degeneration. Nature genetics, 2012; 44(6): 704-8.

Casey Jillian P, Magalhaes Tiago, Conroy Judith M, Regan Regina, Shah Naisha, Anney Richard, Shields Denis C, Abrahams Brett S, Almeida Joana, Bacchelli Elena, Bailey Anthony J, Baird Gillian, Battaglia Agatino, Berney Tom, Bolshakova Nadia, Bolton Patrick F, Bourgeron Thomas, Brennan Sean, Cali Phil, Correia Catarina, Corsello Christina, Coutanche Marc, Dawson Geraldine, de Jonge Maretha, Delorme Richard, Duketis Eftichia, Duque Frederico, Estes Annette, Farrar Penny, Fernandez Bridget A, Folstein Susan E, Foley Suzanne, Fombonne Eric, Freitag Christine M, Gilbert John, Gillberg Christopher, Glessner Joseph T, Green Jonathan, Guter Stephen J, Hakonarson Hakon, Holt Richard, Hughes Gillian, Hus Vanessa, Igliozzi Roberta, Kim Cecilia, Klauck Sabine M, Kolevzon Alexander, Lamb Janine A, Leboyer Marion, Le Couteur Ann, Leventhal Bennett L, Lord Catherine, Lund Sabata C, Maestrini Elena, Mantoulan Carine, Marshall Christian R, McConachie Helen, McDougle Christopher J, McGrath Jane, McMahon William M, Merikangas Alison, Miller Judith, Minopoli Fiorella, Mirza Ghazala K, Munson Jeff, Nelson Stanley F, Nygren Gudrun, Oliveira Guiomar, Pagnamenta Alistair T, Papanikolaou Katerina, Parr Jeremy R, Parrini Barbara, Pickles Andrew, Pinto Dalila, Piven Joseph, Posey David J, Poustka Annemarie, Poustka Fritz, Ragoussis Jiannis, Roge Bernadette, Rutter Michael L, Sequeira Ana F, Soorya Latha, Sousa Inês, Sykes Nuala, Stoppioni Vera, Tancredi Raffaella, Tauber Maïté, Thompson Ann P, Thomson Susanne, Tsiantis John, Van Engeland Herman, Vincent John B, Volkmar Fred, Vorstman Jacob A S, Wallace Simon, Wang Kai, Wassink Thomas H, White Kathy, Wing Kirsty, Wittemeyer Kerstin, Yaspan Brian L, Zwaigenbaum Lonnie, Betancur Catalina, Buxbaum Joseph D, Cantor Rita M, Cook Edwin H, Coon Hilary, Cuccaro Michael L, Geschwind Daniel H, Haines Jonathan L, Hallmayer Joachim, Monaco Anthony P, Nurnberger John I, Pericak-Vance Margaret A, Schellenberg Gerard D, Scherer Stephen W, Sutcliffe James S, Szatmari Peter, Vieland Veronica J, Wijsman Ellen M, Green Andrew, Gill Michael, Gallagher Louise, Vicente Astrid, Ennis Sean   A novel approach of homozygous haplotype sharing identifies candidate genes in autism spectrum disorder. Human genetics, 2012; 131(4): 565-79.

Lee Hane, Graham John M, Rimoin David L, Lachman Ralph S, Krejci Pavel, Tompson Stuart W, Nelson Stanley F, Krakow Deborah, Cohn Daniel H   Exome sequencing identifies PDE4D mutations in acrodysostosis. American journal of human genetics, 2012; 90(4): 746-51.

Loo Sandra K, Shtir Corina, Doyle Alysa E, Mick Eric, McGough James J, McCracken James, Biederman Joseph, Smalley Susan L, Cantor Rita M, Faraone Stephen V, Nelson Stanley F   Genome-wide association study of intelligence: additive effects of novel brain expressed genes. Journal of the American Academy of Child and Adolescent Psychiatry, 2012; 51(4): 432-440.e2.

Palomaki Glenn E, Deciu Cosmin, Kloza Edward M, Lambert-Messerlian Geralyn M, Haddow James E, Neveux Louis M, Ehrich Mathias, van den Boom Dirk, Bombard Allan T, Grody Wayne W, Nelson Stanley F, Canick Jacob A   DNA sequencing of maternal plasma reliably identifies trisomy 18 and trisomy 13 as well as Down syndrome: an international collaborative study. Genetics in medicine : official journal of the American College of Medical Genetics, 2012; 14(3): 296-305.

Li Gang, Bahn Jae Hoon, Lee Jae-Hyung, Peng Guangdun, Chen Zugen, Nelson Stanley F, Xiao Xinshu   Identification of allele-specific alternative mRNA processing via transcriptome sequencing. Nucleic acids research, 2012; 51(4): .

Shi Hubing, Moriceau Gatien, Kong Xiangju, Lee Mi-Kyung, Lee Hane, Koya Richard C, Ng Charles, Chodon Thinle, Scolyer Richard A, Dahlman Kimberly B, Sosman Jeffrey A, Kefford Richard F, Long Georgina V, Nelson Stanley F, Ribas Antoni, Lo Roger S   Melanoma whole-exome sequencing identifies (V600E)B-RAF amplification-mediated acquired B-RAF inhibitor resistance. Nature communications, 2012; 3(4): 724.

Lee Ji Eun, Silhavy Jennifer L, Zaki Maha S, Schroth Jana, Bielas Stephanie L, Marsh Sarah E, Olvera Jesus, Brancati Francesco, Iannicelli Miriam, Ikegami Koji, Schlossman Andrew M, Merriman Barry, Attié-Bitach Tania, Logan Clare V, Glass Ian A, Cluckey Andrew, Louie Carrie M, Lee Jeong Ho, Raynes Hilary R, Rapin Isabelle, Castroviejo Ignacio P, Setou Mitsutoshi, Barbot Clara, Boltshauser Eugen, Nelson Stanley F, Hildebrandt Friedhelm, Johnson Colin A, Doherty Daniel A, Valente Enza Maria, Gleeson Joseph G   CEP41 is mutated in Joubert syndrome and is required for tubulin glutamylation at the cilium. Nature genetics, 2012; 44(2): 193-9.

Willer Tobias, Lee Hane, Lommel Mark, Yoshida-Moriguchi Takako, de Bernabe Daniel Beltran Valero, Venzke David, Cirak Sebahattin, Schachter Harry, Vajsar Jiri, Voit Thomas, Muntoni Francesco, Loder Andrea S, Dobyns William B, Winder Thomas L, Strahl Sabine, Mathews Katherine D, Nelson Stanley F, Moore Steven A, Campbell Kevin P   ISPD loss-of-function mutations disrupt dystroglycan O-mannosylation and cause Walker-Warburg syndrome. Nature genetics, 2012; 44(5): 575-80.

Ombrello Michael J, Remmers Elaine F, Sun Guangping, Freeman Alexandra F, Datta Shrimati, Torabi-Parizi Parizad, Subramanian Naeha, Bunney Tom D, Baxendale Rhona W, Martins Marta S, Romberg Neil, Komarow Hirsh, Aksentijevich Ivona, Kim Hun Sik, Ho Jason, Cruse Glenn, Jung Mi-Yeon, Gilfillan Alasdair M, Metcalfe Dean D, Nelson Celeste, O'Brien Michelle, Wisch Laura, Stone Kelly, Douek Daniel C, Gandhi Chhavi, Wanderer Alan A, Lee Hane, Nelson Stanley F, Shianna Kevin V, Cirulli Elizabeth T, Goldstein David B, Long Eric O, Moir Susan, Meffre Eric, Holland Steven M, Kastner Daniel L, Katan Matilda, Hoffman Hal M, Milner Joshua D   Cold urticaria, immunodeficiency, and autoimmunity related to PLCG2 deletions. The New England journal of medicine, 2012; 366(4): 330-8.

Elia Josephine, Glessner Joseph T, Wang Kai, Takahashi Nagahide, Shtir Corina J, Hadley Dexter, Sleiman Patrick M A, Zhang Haitao, Kim Cecilia E, Robison Reid, Lyon Gholson J, Flory James H, Bradfield Jonathan P, Imielinski Marcin, Hou Cuiping, Frackelton Edward C, Chiavacci Rosetta M, Sakurai Takeshi, Rabin Cara, Middleton Frank A, Thomas Kelly A, Garris Maria, Mentch Frank, Freitag Christine M, Steinhausen Hans-Christoph, Todorov Alexandre A, Reif Andreas, Rothenberger Aribert, Franke Barbara, Mick Eric O, Roeyers Herbert, Buitelaar Jan, Lesch Klaus-Peter, Banaschewski Tobias, Ebstein Richard P, Mulas Fernando, Oades Robert D, Sergeant Joseph, Sonuga-Barke Edmund, Renner Tobias J, Romanos Marcel, Romanos Jasmin, Warnke Andreas, Walitza Susanne, Meyer Jobst, Pálmason Haukur, Seitz Christiane, Loo Sandra K, Smalley Susan L, Biederman Joseph, Kent Lindsey, Asherson Philip, Anney Richard J L, Gaynor J William, Shaw Philip, Devoto Marcella, White Peter S, Grant Struan F A, Buxbaum Joseph D, Rapoport Judith L, Williams Nigel M, Nelson Stanley F, Faraone Stephen V, Hakonarson Hakon   Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder. Nature genetics, 2012; 44(1): 78-84.

Liu Yue, Ye Fei, Yamada Kazunari, Tso Jonathan L, Zhang Yibei, Nguyen David H, Dong Qinghua, Soto Horacio, Choe Jinny, Dembo Anna, Wheeler Hayley, Eskin Ascia, Schmid Ingrid, Yong William H, Mischel Paul S, Cloughesy Timothy F, Kornblum Harley I, Nelson Stanley F, Liau Linda M, Tso Cho-Lea   Autocrine endothelin-3/endothelin receptor B signaling maintains cellular and molecular properties of glioblastoma stem cells. Molecular cancer research : MCR, 2011; 9(12): 1668-85.

Palomaki Glenn E, Kloza Edward M, Lambert-Messerlian Geralyn M, Haddow James E, Neveux Louis M, Ehrich Mathias, van den Boom Dirk, Bombard Allan T, Deciu Cosmin, Grody Wayne W, Nelson Stanley F, Canick Jacob A   DNA sequencing of maternal plasma to detect Down syndrome: an international clinical validation study. Genetics in medicine : official journal of the American College of Medical Genetics, 2011; 13(11): 913-20.

Kyriakides Theodoros, Pegoraro E, Hoffman E P, Piva L, Cagnin S, Lanfranchi G, Griggs Robert C, Nelson Stanley F   SPP1 genotype is a determinant of disease severity in Duchenne muscular dystrophy: predicting the severity of Duchenne muscular dystrophy: implications for treatment. Neurology, 2011; 77(20): 1858; author reply 1858-9.

Sathirapongsasuti Jarupon Fah, Lee Hane, Horst Basil A J, Brunner Georg, Cochran Alistair J, Binder Scott, Quackenbush John, Nelson Stanley F   Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV. Bioinformatics (Oxford, England), 2011; 27(19): 2648-54.

McCannel Tara A, Burgess Barry L, Nelson Stanley F, Eskin Ascia, Straatsma Bradley R   Genomic identification of significant targets in ciliochoroidal melanoma. Investigative ophthalmology & visual science, 2011; 52(6): 3018-22.

Burgess Barry L, Rao Nagesh P, Eskin Ascia, Nelson Stanley F, McCannel Tara A   Characterization of three cell lines derived from fine needle biopsy of choroidal melanoma with metastatic outcome. Molecular vision, 2011; 17(4): 607-15.

Goudie David R, D'Alessandro Mariella, Merriman Barry, Lee Hane, Szeverényi Ildikó, Avery Stuart, O'Connor Brian D, Nelson Stanley F, Coats Stephanie E, Stewart Arlene, Christie Lesley, Pichert Gabriella, Friedel Jean, Hayes Ian, Burrows Nigel, Whittaker Sean, Gerdes Anne-Marie, Broesby-Olsen Sigurd, Ferguson-Smith Malcolm A, Verma Chandra, Lunny Declan P, Reversade Bruno, Lane E Birgitte   Multiple self-healing squamous epithelioma is caused by a disease-specific spectrum of mutations in TGFBR1. Nature genetics, 2011; 43(4): 365-9.

Harper Marc A, Chen Zugen, Toy Traci, Machado Iara M P, Nelson Stanley F, Liao James C, Lee Christopher J   Phenotype sequencing: identifying the genes that cause a phenotype directly from pooled sequencing of independent mutants. PloS one, 2011; 6(2): e16517.

Prins Robert M, Soto Horacio, Konkankit Vera, Odesa Sylvia K, Eskin Ascia, Yong William H, Nelson Stanley F, Liau Linda M   Gene expression profile correlates with T-cell infiltration and relative survival in glioblastoma patients vaccinated with dendritic cell immunotherapy. Clinical cancer research : an official journal of the American Association for Cancer Research, 2011; 17(6): 1603-15.

Nelson Stanley F, Griggs Robert C   Predicting the severity of Duchenne muscular dystrophy: implications for treatment. Neurology, 2011; 76(3): 208-9.

Leuchter Andrew F, Cook Ian A, Hamilton Steven P, Narr Katherine L, Toga Arthur, Hunter Aimee M, Faull Kym, Whitelegge Julian, Andrews Anne M, Loo Joseph, Way Baldwin, Nelson Stanley F, Horvath Steven, Lebowitz Barry D   Biomarkers to predict antidepressant response. Current psychiatry reports, 2010; 12(6): 553-62.

Tian Jing, Ling Ling, Shboul Mohammad, Lee Hane, O'Connor Brian, Merriman Barry, Nelson Stanley F, Cool Simon, Ababneh Osama H, Al-Hadidy Azmy, Masri Amira, Hamamy Hanan, Reversade Bruno   Loss of CHSY1, a secreted FRINGE enzyme, causes syndromic brachydactyly in humans via increased NOTCH signaling. American journal of human genetics, 2010; 87(6): 768-78.

Nazarian Ramin, Shi Hubing, Wang Qi, Kong Xiangju, Koya Richard C, Lee Hane, Chen Zugen, Lee Mi-Kyung, Attar Narsis, Sazegar Hooman, Chodon Thinle, Nelson Stanley F, McArthur Grant, Sosman Jeffrey A, Ribas Antoni, Lo Roger S   Melanomas acquire resistance to B-RAF(V600E) inhibition by RTK or N-RAS upregulation. Nature, 2010; 468(7326): 973-7.

Anney Richard, Klei Lambertus, Pinto Dalila, Regan Regina, Conroy Judith, Magalhaes Tiago R, Correia Catarina, Abrahams Brett S, Sykes Nuala, Pagnamenta Alistair T, Almeida Joana, Bacchelli Elena, Bailey Anthony J, Baird Gillian, Battaglia Agatino, Berney Tom, Bolshakova Nadia, Bölte Sven, Bolton Patrick F, Bourgeron Thomas, Brennan Sean, Brian Jessica, Carson Andrew R, Casallo Guillermo, Casey Jillian, Chu Su H, Cochrane Lynne, Corsello Christina, Crawford Emily L, Crossett Andrew, Dawson Geraldine, de Jonge Maretha, Delorme Richard, Drmic Irene, Duketis Eftichia, Duque Frederico, Estes Annette, Farrar Penny, Fernandez Bridget A, Folstein Susan E, Fombonne Eric, Freitag Christine M, Gilbert John, Gillberg Christopher, Glessner Joseph T, Goldberg Jeremy, Green Jonathan, Guter Stephen J, Hakonarson Hakon, Heron Elizabeth A, Hill Matthew, Holt Richard, Howe Jennifer L, Hughes Gillian, Hus Vanessa, Igliozzi Roberta, Kim Cecilia, Klauck Sabine M, Kolevzon Alexander, Korvatska Olena, Kustanovich Vlad, Lajonchere Clara M, Lamb Janine A, Laskawiec Magdalena, Leboyer Marion, Le Couteur Ann, Leventhal Bennett L, Lionel Anath C, Liu Xiao-Qing, Lord Catherine, Lotspeich Linda, Lund Sabata C, Maestrini Elena, Mahoney William, Mantoulan Carine, Marshall Christian R, McConachie Helen, McDougle Christopher J, McGrath Jane, McMahon William M, Melhem Nadine M, Merikangas Alison, Migita Ohsuke, Minshew Nancy J, Mirza Ghazala K, Munson Jeff, Nelson Stanley F, Noakes Carolyn, Noor Abdul, Nygren Gudrun, Oliveira Guiomar, Papanikolaou Katerina, Parr Jeremy R, Parrini Barbara, Paton Tara, Pickles Andrew, Piven Joseph, Posey David J, Poustka Annemarie, Poustka Fritz, Prasad Aparna, Ragoussis Jiannis, Renshaw Katy, Rickaby Jessica, Roberts Wendy, Roeder Kathryn, Roge Bernadette, Rutter Michael L, Bierut Laura J, Rice John P, Salt Jeff, Sansom Katherine, Sato Daisuke, Segurado Ricardo, Senman Lili, Shah Naisha, Sheffield Val C, Soorya Latha, Sousa Inês, Stoppioni Vera, Strawbridge Christina, Tancredi Raffaella, Tansey Katherine, Thiruvahindrapduram Bhooma, Thompson Ann P, Thomson Susanne, Tryfon Ana, Tsiantis John, Van Engeland Herman, Vincent John B, Volkmar Fred, Wallace Simon, Wang Kai, Wang Zhouzhi, Wassink Thomas H, Wing Kirsty, Wittemeyer Kerstin, Wood Shawn, Yaspan Brian L, Zurawiecki Danielle, Zwaigenbaum Lonnie, Betancur Catalina, Buxbaum Joseph D, Cantor Rita M, Cook Edwin H, Coon Hilary, Cuccaro Michael L, Gallagher Louise, Geschwind Daniel H, Gill Michael, Haines Jonathan L, Miller Judith, Monaco Anthony P, Nurnberger John I, Paterson Andrew D, Pericak-Vance Margaret A, Schellenberg Gerard D, Scherer Stephen W, Sutcliffe James S, Szatmari Peter, Vicente Astrid M, Vieland Veronica J, Wijsman Ellen M, Devlin Bernie, Ennis Sean, Hallmayer Joachim   A genome-wide scan for common alleles affecting risk for autism. Human molecular genetics, 2010; 19(20): 4072-82.

Funari Vincent A, Krakow Deborah, Nevarez Lisette, Chen Zugen, Funari Tara L, Vatanavicharn Nithiwat, Wilcox William R, Rimoin David L, Nelson Stanley F, Cohn Daniel H   BMPER mutation in diaphanospondylodysostosis identified by ancestral autozygosity mapping and targeted high-throughput sequencing. American journal of human genetics, 2010; 87(4): 532-7.

Lee Hane, Marvin Alison R, Watson Tamara, Piggot Judith, Law J Kiely, Law Paul A, Constantino John N, Nelson Stanley F   Accuracy of phenotyping of autistic children based on Internet implemented parent report. American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2010; 153B(6): 1119-26.

Mick Eric, Todorov Alexandre, Smalley Susan, Hu Xiaolan, Loo Sandra, Todd Richard D, Biederman Joseph, Byrne Deirdre, Dechairo Bryan, Guiney Allan, McCracken James, McGough James, Nelson Stanley F, Reiersen Angela M, Wilens Timothy E, Wozniak Janet, Neale Benjamin M, Faraone Stephen V   Family-based genome-wide association scan of attention-deficit/hyperactivity disorder. Journal of the American Academy of Child and Adolescent Psychiatry, 2010; 49(9): 898-905.e3.

McCannel Tara A, Burgess Barry L, Rao Nagesh P, Nelson Stanley F, Straatsma Bradley R   Identification of candidate tumor oncogenes by integrative molecular analysis of choroidal melanoma fine-needle aspiration biopsy specimens. Archives of ophthalmology, 2010; 128(9): 1170-7.

Pinto Dalila, Pagnamenta Alistair T, Klei Lambertus, Anney Richard, Merico Daniele, Regan Regina, Conroy Judith, Magalhaes Tiago R, Correia Catarina, Abrahams Brett S, Almeida Joana, Bacchelli Elena, Bader Gary D, Bailey Anthony J, Baird Gillian, Battaglia Agatino, Berney Tom, Bolshakova Nadia, Bölte Sven, Bolton Patrick F, Bourgeron Thomas, Brennan Sean, Brian Jessica, Bryson Susan E, Carson Andrew R, Casallo Guillermo, Casey Jillian, Chung Brian H Y, Cochrane Lynne, Corsello Christina, Crawford Emily L, Crossett Andrew, Cytrynbaum Cheryl, Dawson Geraldine, de Jonge Maretha, Delorme Richard, Drmic Irene, Duketis Eftichia, Duque Frederico, Estes Annette, Farrar Penny, Fernandez Bridget A, Folstein Susan E, Fombonne Eric, Freitag Christine M, Gilbert John, Gillberg Christopher, Glessner Joseph T, Goldberg Jeremy, Green Andrew, Green Jonathan, Guter Stephen J, Hakonarson Hakon, Heron Elizabeth A, Hill Matthew, Holt Richard, Howe Jennifer L, Hughes Gillian, Hus Vanessa, Igliozzi Roberta, Kim Cecilia, Klauck Sabine M, Kolevzon Alexander, Korvatska Olena, Kustanovich Vlad, Lajonchere Clara M, Lamb Janine A, Laskawiec Magdalena, Leboyer Marion, Le Couteur Ann, Leventhal Bennett L, Lionel Anath C, Liu Xiao-Qing, Lord Catherine, Lotspeich Linda, Lund Sabata C, Maestrini Elena, Mahoney William, Mantoulan Carine, Marshall Christian R, McConachie Helen, McDougle Christopher J, McGrath Jane, McMahon William M, Merikangas Alison, Migita Ohsuke, Minshew Nancy J, Mirza Ghazala K, Munson Jeff, Nelson Stanley F, Noakes Carolyn, Noor Abdul, Nygren Gudrun, Oliveira Guiomar, Papanikolaou Katerina, Parr Jeremy R, Parrini Barbara, Paton Tara, Pickles Andrew, Pilorge Marion, Piven Joseph, Ponting Chris P, Posey David J, Poustka Annemarie, Poustka Fritz, Prasad Aparna, Ragoussis Jiannis, Renshaw Katy, Rickaby Jessica, Roberts Wendy, Roeder Kathryn, Roge Bernadette, Rutter Michael L, Bierut Laura J, Rice John P, Salt Jeff, Sansom Katherine, Sato Daisuke, Segurado Ricardo, Sequeira Ana F, Senman Lili, Shah Naisha, Sheffield Val C, Soorya Latha, Sousa Inês, Stein Olaf, Sykes Nuala, Stoppioni Vera, Strawbridge Christina, Tancredi Raffaella, Tansey Katherine, Thiruvahindrapduram Bhooma, Thompson Ann P, Thomson Susanne, Tryfon Ana, Tsiantis John, Van Engeland Herman, Vincent John B, Volkmar Fred, Wallace Simon, Wang Kai, Wang Zhouzhi, Wassink Thomas H, Webber Caleb, Weksberg Rosanna, Wing Kirsty, Wittemeyer Kerstin, Wood Shawn, Wu Jing, Yaspan Brian L, Zurawiecki Danielle, Zwaigenbaum Lonnie, Buxbaum Joseph D, Cantor Rita M, Cook Edwin H, Coon Hilary, Cuccaro Michael L, Devlin Bernie, Ennis Sean, Gallagher Louise, Geschwind Daniel H, Gill Michael, Haines Jonathan L, Hallmayer Joachim, Miller Judith, Monaco Anthony P, Nurnberger John I, Paterson Andrew D, Pericak-Vance Margaret A, Schellenberg Gerard D, Szatmari Peter, Vicente Astrid M, Vieland Veronica J, Wijsman Ellen M, Scherer Stephen W, Sutcliffe James S, Betancur Catalina   Functional impact of global rare copy number variation in autism spectrum disorders. Nature, 2010; 466(7304): 368-72.

Homer Nils, Nelson Stanley F, Merriman Barry   Local alignment of generalized k-base encoded DNA sequence. BMC bioinformatics, 2010; 11(7304): 347.

Kim Woo-Kyun, Meliton Vicente, Tetradis Sotirios, Weinmaster Gerry, Hahn Theodore J, Carlson Marc, Nelson Stanley F, Parhami Farhad   Osteogenic oxysterol, 20(S)-hydroxycholesterol, induces notch target gene expression in bone marrow stromal cells. Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2010; 25(4): 782-95.

Kappadakunnel Melanie, Eskin Ascia, Dong Jun, Nelson Stanley F, Mischel Paul S, Liau Linda M, Ngheimphu Phioanh, Lai Albert, Cloughesy Timothy F, Goldin Jonathan, Pope Whitney B   Stem cell associated gene expression in glioblastoma multiforme: relationship to survival and the subventricular zone. Journal of neuro-oncology, 2010; 96(3): 359-67.

Homer Nils, Nelson Stanley F   Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA. Genome biology, 2010; 11(10): R99.

Smits Patrick, Bolton Andrew D, Funari Vincent, Hong Minh, Boyden Eric D, Lu Lei, Manning Danielle K, Dwyer Noelle D, Moran Jennifer L, Prysak Mary, Merriman Barry, Nelson Stanley F, Bonafé Luisa, Superti-Furga Andrea, Ikegawa Shiro, Krakow Deborah, Cohn Daniel H, Kirchhausen Tom, Warman Matthew L, Beier David R   Lethal skeletal dysplasia in mice and humans lacking the golgin GMAP-210. The New England journal of medicine, 2010; 362(3): 206-16.

O'Connor Brian D, Merriman Barry, Nelson Stanley F   SeqWare Query Engine: storing and searching sequence data in the cloud. BMC bioinformatics, 2010; 11 Suppl 12(3): S2.

Clark Michael James, Homer Nils, O'Connor Brian D, Chen Zugen, Eskin Ascia, Lee Hane, Merriman Barry, Nelson Stanley F   U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line. PLoS genetics, 2010; 6(1): e1000832.

Nelson Stanley F, Crosbie Rachelle H, Miceli M Carrie, Spencer Melissa J   Emerging genetic therapies to treat Duchenne muscular dystrophy. Current opinion in neurology, 2009; 22(5): 532-8.

Lu Kan V, Zhu Shaojun, Cvrljevic Anna, Huang Tiffany T, Sarkaria Shawn, Ahkavan David, Dang Julie, Dinca Eduard B, Plaisier Seema B, Oderberg Isaac, Lee Yohan, Chen Zugen, Caldwell Jeremy S, Xie Yongmin, Loo Joseph A, Seligson David, Chakravari Arnab, Lee Francis Y, Weinmann Roberto, Cloughesy Timothy F, Nelson Stanley F, Bergers Gabriele, Graeber Thomas, Furnari Frank B, James C David, Cavenee Webster K, Johns Terrance G, Mischel Paul S   Fyn and SRC are effectors of oncogenic epidermal growth factor receptor signaling in glioblastoma patients. Cancer research, 2009; 69(17): 6889-98.

Reversade Bruno, Escande-Beillard Nathalie, Dimopoulou Aikaterini, Fischer Björn, Chng Serene C, Li Yun, Shboul Mohammad, Tham Puay-Yoke, Kayserili Hülya, Al-Gazali Lihadh, Shahwan Monzer, Brancati Francesco, Lee Hane, O'Connor Brian D, Schmidt-von Kegler Mareen, Merriman Barry, Nelson Stanley F, Masri Amira, Alkazaleh Fawaz, Guerra Deanna, Ferrari Paola, Nanda Arti, Rajab Anna, Markie David, Gray Mary, Nelson John, Grix Arthur, Sommer Annemarie, Savarirayan Ravi, Janecke Andreas R, Steichen Elisabeth, Sillence David, Hausser Ingrid, Budde Birgit, Nürnberg Gudrun, Nürnberg Peter, Seemann Petra, Kunkel Désirée, Zambruno Giovanna, Dallapiccola Bruno, Schuelke Markus, Robertson Stephen, Hamamy Hanan, Wollnik Bernd, Van Maldergem Lionel, Mundlos Stefan, Kornak Uwe   Mutations in PYCR1 cause cutis laxa with progeroid features. Nature genetics, 2009; 41(9): 1016-21.

Homer Nils, Merriman Barry, Nelson Stanley F   Local alignment of two-base encoded DNA sequence. BMC bioinformatics, 2009; 10(1): 175.

Liu Qinghai, Nguyen David H, Dong Qinghua, Shitaku Peter, Chung Kenneth, Liu On Ying, Tso Jonathan L, Liu Jason Y, Konkankit Veerauo, Cloughesy Timothy F, Mischel Paul S, Lane Timothy F, Liau Linda M, Nelson Stanley F, Tso Cho-Lea   Molecular properties of CD133+ glioblastoma stem cells derived from treatment-refractory recurrent brain tumors. Journal of neuro-oncology, 2009; 94(1): 1-19.

Saghizadeh Mehrnoosh, Akhmedov Novrouz B, Yamashita Clyde K, Gribanova Yekaterina, Theendakara Veena, Mendoza Emmanuel, Nelson Stanley F, Ljubimov Alexander V, Farber Debora B   ZBED4, a BED-type zinc-finger protein in the cones of the human retina. Investigative ophthalmology & visual science, 2009; 50(8): 3580-8.

Merrill Amy E, Merriman Barry, Farrington-Rock Claire, Camacho Natalia, Sebald Eiman T, Funari Vincent A, Schibler Matthew J, Firestein Marc H, Cohn Zachary A, Priore Mary Ann, Thompson Alicia K, Rimoin David L, Nelson Stanley F, Cohn Daniel H, Krakow Deborah   Ciliary abnormalities due to defects in the retrograde transport protein DYNC2H1 in short-rib polydactyly syndrome. American journal of human genetics, 2009; 84(4): 542-9.

Tompson Stuart W, Merriman Barry, Funari Vincent A, Fresquet Maryline, Lachman Ralph S, Rimoin David L, Nelson Stanley F, Briggs Michael D, Cohn Daniel H, Krakow Deborah   A recessive skeletal dysplasia, SEMD aggrecan type, results from a missense mutation affecting the C-type lectin domain of aggrecan. American journal of human genetics, 2009; 84(1): 72-9.

Homer Nils, Merriman Barry, Nelson Stanley F   BFAST: an alignment tool for large scale genome resequencing. PloS one, 2009; 4(11): e7767.

Day Allen, Dong Jun, Funari Vincent A, Harry Bret, Strom Samuel P, Cohn Dan H, Nelson Stanley F   Disease gene characterization through large-scale co-expression analysis. PloS one, 2009; 4(12): e8491.

Lee Hane, O'Connor Brian D, Merriman Barry, Funari Vincent A, Homer Nils, Chen Zugen, Cohn Daniel H, Nelson Stanley F   Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencing. BMC genomics, 2009; 10(10): 646.

Lu Ake T, Ogdie Matthew N, Järvelin Marjo-Ritta, Moilanen Irma K, Loo Sandra K, McCracken James T, McGough James J, Yang May H, Peltonen Leena, Nelson Stanley F, Cantor Rita M, Smalley Susan L   Association of the cannabinoid receptor gene (CNR1) with ADHD and post-traumatic stress disorder. American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2008; 147B(8): 1488-94.

Lee Yohan, Scheck Adrienne C, Cloughesy Timothy F, Lai Albert, Dong Jun, Farooqi Haumith K, Liau Linda M, Horvath Steve, Mischel Paul S, Nelson Stanley F   Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age. BMC medical genomics, 2008; 1(10): 52.

Potikyan Gary, France Kelly A, Carlson Marc R J, Dong Jun, Nelson Stanley F, Denny Christopher T   Genetically defined EWS/FLI1 model system suggests mesenchymal origin of Ewing's family tumors. Laboratory investigation; a journal of technical methods and pathology, 2008; 88(12): 1291-302.

Zhou Kaixin, Dempfle Astrid, Arcos-Burgos Mauricio, Bakker Steven C, Banaschewski Tobias, Biederman Joseph, Buitelaar Jan, Castellanos F Xavier, Doyle Alysa, Ebstein Richard P, Ekholm Jenny, Forabosco Paola, Franke Barbara, Freitag Christine, Friedel Susann, Gill Michael, Hebebrand Johannes, Hinney Anke, Jacob Christian, Lesch Klaus Peter, Loo Sandra K, Lopera Francisco, McCracken James T, McGough James J, Meyer Jobst, Mick Eric, Miranda Ana, Muenke Maximilian, Mulas Fernando, Nelson Stanley F, Nguyen T Trang, Oades Robert D, Ogdie Matthew N, Palacio Juan David, Pineda David, Reif Andreas, Renner Tobias J, Roeyers Herbert, Romanos Marcel, Rothenberger Aribert, Schäfer Helmut, Sergeant Joseph, Sinke Richard J, Smalley Susan L, Sonuga-Barke Edmund, Steinhausen Hans-Christoph, van der Meulen Emma, Walitza Susanne, Warnke Andreas, Lewis Cathryn M, Faraone Stephen V, Asherson Philip   Meta-analysis of genome-wide linkage scans of attention deficit hyperactivity disorder. American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2008; 147B(8): 1392-8.

Lee Hane, Jen Joanna C, Cha Yoon-Hee, Nelson Stanley F, Baloh Robert W   Phenotypic and genetic analysis of a large family with migraine-associated vertigo. Headache, 2008; 48(10): 1460-7.

McGough James J, Loo Sandra K, McCracken James T, Dang Jeffrey, Clark Shaunna, Nelson Stanley F, Smalley Susan L   CBCL pediatric bipolar disorder profile and ADHD: comorbidity and quantitative trait loci analysis. Journal of the American Academy of Child and Adolescent Psychiatry, 2008; 47(10): 1151-7.

Pellegrini Matteo, Cheng Jerry C, Voutila Jon, Judelson Dejah, Taylor Julie, Nelson Stanley F, Sakamoto Kathleen M   Expression profile of CREB knockdown in myeloid leukemia cells. BMC cancer, 2008; 8(1): 264.

Pope Whitney B, Chen Jenny H, Dong Jun, Carlson Marc R J, Perlina Alla, Cloughesy Timothy F, Liau Linda M, Mischel Paul S, Nghiemphu Phioanh, Lai Albert, Nelson Stanley F   Relationship between gene expression and enhancement in glioblastoma multiforme: exploratory DNA microarray analysis. Radiology, 2008; 249(1): 268-77.

Homer Nils, Tembe Waibhav D, Szelinger Szabolcs, Redman Margot, Stephan Dietrich A, Pearson John V, Nelson Stanley F, Craig David   Multimarker analysis and imputation of multiple platform pooling-based genome-wide association studies. Bioinformatics (Oxford, England), 2008; 24(17): 1896-902.

Rock Matthew J, Prenen Jean, Funari Vincent A, Funari Tara L, Merriman Barry, Nelson Stanley F, Lachman Ralph S, Wilcox William R, Reyno Soraya, Quadrelli Roberto, Vaglio Alicia, Owsianik Grzegorz, Janssens Annelies, Voets Thomas, Ikegawa Shiro, Nagai Toshiro, Rimoin David L, Nilius Bernd, Cohn Daniel H   Gain-of-function mutations in TRPV4 cause autosomal dominant brachyolmia. Nature genetics, 2008; 40(8): 999-1003.

Sivagnanam Mamata, Mueller James L, Lee Hane, Chen Zugen, Nelson Stanley F, Turner Dan, Zlotkin Stanley H, Pencharz Paul B, Ngan Bo-Yee, Libiger Ondrej, Schork Nicholas J, Lavine Joel E, Taylor Sharon, Newbury Robert O, Kolodner Richard D, Hoffman Hal M   Identification of EpCAM as the gene for congenital tufting enteropathy. Gastroenterology, 2008; 135(2): 429-37.

Homer Nils, Szelinger Szabolcs, Redman Margot, Duggan David, Tembe Waibhav, Muehling Jill, Pearson John V, Stephan Dietrich A, Nelson Stanley F, Craig David W   Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays. PLoS genetics, 2008; 4(8): e1000167.

Walsh Tom, McClellan Jon M, McCarthy Shane E, Addington Anjené M, Pierce Sarah B, Cooper Greg M, Nord Alex S, Kusenda Mary, Malhotra Dheeraj, Bhandari Abhishek, Stray Sunday M, Rippey Caitlin F, Roccanova Patricia, Makarov Vlad, Lakshmi B, Findling Robert L, Sikich Linmarie, Stromberg Thomas, Merriman Barry, Gogtay Nitin, Butler Philip, Eckstrand Kristen, Noory Laila, Gochman Peter, Long Robert, Chen Zugen, Davis Sean, Baker Carl, Eichler Evan E, Meltzer Paul S, Nelson Stanley F, Singleton Andrew B, Lee Ming K, Rapoport Judith L, King Mary-Claire, Sebat Jonathan   Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. Science (New York, N.Y.), 2008; 320(5875): 539-43.

Cokus Shawn J, Feng Suhua, Zhang Xiaoyu, Chen Zugen, Merriman Barry, Haudenschild Christian D, Pradhan Sriharsa, Nelson Stanley F, Pellegrini Matteo, Jacobsen Steven E   Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 2008; 452(7184): 215-9.

Alarcón Maricela, Abrahams Brett S, Stone Jennifer L, Duvall Jacqueline A, Perederiy Julia V, Bomar Jamee M, Sebat Jonathan, Wigler Michael, Martin Christa L, Ledbetter David H, Nelson Stanley F, Cantor Rita M, Geschwind Daniel H   Linkage, association, and gene-expression analyses identify CNTNAP2 as an autism-susceptibility gene. American journal of human genetics, 2008; 82(1): 150-9.

Nakano Ichiro, Masterman-Smith Michael, Saigusa Kuniyasu, Paucar Andres A, Horvath Steve, Shoemaker Lorelei, Watanabe Momoko, Negro Alejandra, Bajpai Ruchi, Howes Amy, Lelievre Vincent, Waschek James A, Lazareff Jorge A, Freije William A, Liau Linda M, Gilbertson Richard J, Cloughesy Timothy F, Geschwind Daniel H, Nelson Stanley F, Mischel Paul S, Terskikh Alexey V, Kornblum Harley I   Maternal embryonic leucine zipper kinase is a key regulator of the proliferation of malignant brain tumors, including brain tumor stem cells. Journal of neuroscience research, 2008; 86(1): 48-60.

Stanczak Christopher M, Chen Zugen, Nelson Stanley F, Suchard Marc, McCabe Edward R B, McGhee Sean   Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome. Human mutation, 2008; 29(1): 176-81.

Nyman Emma S, Ogdie Matthew N, Loukola Anu, Varilo Teppo, Taanila Anja, Hurtig Tuula, Moilanen Irma K, Loo Sandra K, McGough James J, Järvelin Marjo-Riitta, Smalley Susan L, Nelson Stanley F, Peltonen Leena   ADHD candidate gene study in a population-based birth cohort: association with DBH and DRD2. Journal of the American Academy of Child and Adolescent Psychiatry, 2007; 46(12): 1614-21.

Smalley Susan L, McGough James J, Moilanen Irma K, Loo Sandra K, Taanila Anja, Ebeling Hanna, Hurtig Tuula, Kaakinen Marika, Humphrey Lorie A, McCracken James T, Varilo Teppo, Yang May H, Nelson Stanley F, Peltonen Leena, Järvelin Marjo-Riitta   Prevalence and psychiatric comorbidity of attention-deficit/hyperactivity disorder in an adolescent Finnish population. Journal of the American Academy of Child and Adolescent Psychiatry, 2007; 46(12): 1575-83.

Richards Anna, van den Maagdenberg Arn M J M, Jen Joanna C, Kavanagh David, Bertram Paula, Spitzer Dirk, Liszewski M Kathryn, Barilla-Labarca Maria-Louise, Terwindt Gisela M, Kasai Yumi, McLellan Mike, Grand Mark Gilbert, Vanmolkot Kaate R J, de Vries Boukje, Wan Jijun, Kane Michael J, Mamsa Hafsa, Schäfer Ruth, Stam Anine H, Haan Joost, de Jong Paulus T V M, Storimans Caroline W, van Schooneveld Mary J, Oosterhuis Jendo A, Gschwendter Andreas, Dichgans Martin, Kotschet Katya E, Hodgkinson Suzanne, Hardy Todd A, Delatycki Martin B, Hajj-Ali Rula A, Kothari Parul H, Nelson Stanley F, Frants Rune R, Baloh Robert W, Ferrari Michel D, Atkinson John P   C-terminal truncations in human 3'-5' DNA exonuclease TREX1 cause autosomal dominant retinal vasculopathy with cerebral leukodystrophy. Nature genetics, 2007; 39(9): 1068-70.

Liu Tsunglin, Papagiannakopoulos Thales, Puskar Kathy, Qi Shuping, Santiago Fernando, Clay William, Lao Kaiqin, Lee Yohan, Nelson Stanley F, Kornblum Harley I, Doyle Frank, Petzold Linda, Shraiman Boris, Kosik Kenneth S   Detection of a microRNA signal in an in vivo expression set of mRNAs. PloS one, 2007; 2(8): e804.

Lee Hane, Sininger Lauren, Jen Joanna C, Cha Yoon-Hee, Baloh Robert W, Nelson Stanley F   Association of progesterone receptor with migraine-associated vertigo. Neurogenetics, 2007; 8(3): 195-200.

Funari Vincent A, Day Allen, Krakow Deborah, Cohn Zachary A, Chen Zugen, Nelson Stanley F, Cohn Daniel H   Cartilage-selective genes identified in genome-scale analysis of non-cartilage and cartilage gene expression. BMC genomics, 2007; 8(3): 165.

Kerber Kevin A, Jen Joanna C, Lee Hane, Nelson Stanley F, Baloh Robert W   A new episodic ataxia syndrome with linkage to chromosome 19q13. Archives of neurology, 2007; 64(5): 749-52.

Carlson Marc R J, Pope Whitney B, Horvath Steve, Braunstein Jerome G, Nghiemphu Phioanh, Tso Cho-Lea, Mellinghoff Ingo, Lai Albert, Liau Linda M, Mischel Paul S, Dong Jun, Nelson Stanley F, Cloughesy Timothy F   Relationship between survival and edema in malignant gliomas: role of vascular endothelial growth factor and neuronal pentraxin 2. Clinical cancer research : an official journal of the American Association for Cancer Research, 2007; 13(9): 2592-8.

Day Allen, Carlson Marc R J, Dong Jun, O'Connor Brian D, Nelson Stanley F   Celsius: a community resource for Affymetrix microarray data. Genome biology, 2007; 8(6): R112.

Stanczak Christopher M, Chen Zugen, Zhang Yao-Hua, Nelson Stanley F, McCabe Edward R B   Deletion mapping in Xp21 for patients with complex glycerol kinase deficiency using SNP mapping arrays. Human mutation, 2007; 28(3): 235-42.

Stone Jennifer L, Merriman Barry, Cantor Rita M, Geschwind Daniel H, Nelson Stanley F   High density SNP association study of a major autism linkage region on chromosome 17. Human molecular genetics, 2007; 16(6): 704-15.

Dwyer Jennifer R, Sever Navdar, Carlson Marc, Nelson Stanley F, Beachy Philip A, Parhami Farhad   Oxysterols are novel activators of the hedgehog signaling pathway in pluripotent mesenchymal cells. The Journal of biological chemistry, 2007; 282(12): 8959-68.

Lee Jeffrey C, Vivanco Igor, Beroukhim Rameen, Huang Julie H Y, Feng Whei L, DeBiasi Ralph M, Yoshimoto Koji, King Jennifer C, Nghiemphu Phioanh, Yuza Yuki, Xu Qing, Greulich Heidi, Thomas Roman K, Paez J Guillermo, Peck Timothy C, Linhart David J, Glatt Karen A, Getz Gad, Onofrio Robert, Ziaugra Liuda, Levine Ross L, Gabriel Stacey, Kawaguchi Tomohiro, O'Neill Keith, Khan Haumith, Liau Linda M, Nelson Stanley F, Rao P Nagesh, Mischel Paul, Pieper Russell O, Cloughesy Tim, Leahy Daniel J, Sellers William R, Sawyers Charles L, Meyerson Matthew, Mellinghoff Ingo K   Epidermal growth factor receptor activation in glioblastoma through novel missense mutations in the extracellular domain. PLoS medicine, 2006; 3(12): e485.

Tso Cho-Lea, Shintaku Peter, Chen James, Liu Qinghai, Liu Jason, Chen Zugen, Yoshimoto Koji, Mischel Paul S, Cloughesy Timothy F, Liau Linda M, Nelson Stanley F   Primary glioblastomas express mesenchymal stem-like properties. Molecular cancer research : MCR, 2006; 4(9): 607-19.

Gargalovic Peter S, Imura Minori, Zhang Bin, Gharavi Nima M, Clark Michael J, Pagnon Joanne, Yang Wen-Pin, He Aiqing, Truong Amy, Patel Shilpa, Nelson Stanley F, Horvath Steve, Berliner Judith A, Kirchgessner Todd G, Lusis Aldons J   Identification of inflammatory gene modules based on variations of human endothelial cell responses to oxidized lipids. Proceedings of the National Academy of Sciences of the United States of America, 2006; 103(34): 12741-6.

Lacombe Arnaud, Lee Hane, Zahed Laila, Choucair Mahmoud, Muller Jean-Marc, Nelson Stanley F, Salameh Wael, Vilain Eric   Disruption of POF1B binding to nonmuscle actin filaments is associated with premature ovarian failure. American journal of human genetics, 2006; 79(1): 113-9.

Mitchell Scherise, Ota Asuka, Foster William, Zhang Bin, Fang Zixing, Patel Shilpa, Nelson Stanley F, Horvath Steve, Wang Yibin   Distinct gene expression profiles in adult mouse heart following targeted MAP kinase activation. Physiological genomics, 2006; 25(1): 50-9.

Carlson Marc R J, Zhang Bin, Fang Zixing, Mischel Paul S, Horvath Steve, Nelson Stanley F   Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks. BMC genomics, 2006; 7(1): 40.

Lee Hane, Jen Joanna C, Wang Hui, Chen Zugen, Mamsa Hafsa, Sabatti Chiara, Baloh Robert W, Nelson Stanley F   A genome-wide linkage scan of familial benign recurrent vertigo: linkage to 22q12 with evidence of heterogeneity. Human molecular genetics, 2006; 15(2): 251-8.

Tso Cho-Lea, Freije William A, Day Allen, Chen Zugen, Merriman Barry, Perlina Ally, Lee Yohan, Dia Ederlyn Q, Yoshimoto Koji, Mischel Paul S, Liau Linda M, Cloughesy Timothy F, Nelson Stanley F   Distinct transcription profiles of primary and secondary glioblastoma subgroups. Cancer research, 2006; 66(1): 159-67.

Lee Hans, Zhang Yanqiao, Lee Florence Y, Nelson Stanley F, Gonzalez Frank J, Edwards Peter A   FXR regulates organic solute transporters alpha and beta in the adrenal gland, kidney, and intestine. Journal of lipid research, 2006; 47(1): 201-14.

Todd Richard D, Huang Hongyan, Smalley Susan L, Nelson Stanley F, Willcutt Erik G, Pennington Bruce F, Smith Shelley D, Faraone Stephen V, Neuman Rosalind J   Collaborative analysis of DRD4 and DAT genotypes in population-defined ADHD subtypes. Journal of child psychology and psychiatry, and allied disciplines, 2005; 46(10): 1067-73.

Saghizadeh Mehrnoosh, Kramerov Andrei A, Tajbakhsh Jian, Aoki Annette M, Wang Charles, Chai Ning-Ning, Ljubimova Julia Y, Sasaki Takako, Sosne Gabriel, Carlson Marc R J, Nelson Stanley F, Ljubimov Alexander V   Proteinase and growth factor alterations revealed by gene microarray analysis of human diabetic corneas. Investigative ophthalmology & visual science, 2005; 46(10): 3604-15.

Nakano Ichiro, Paucar Andres A, Bajpai Ruchi, Dougherty Joseph D, Zewail Amani, Kelly Theresa K, Kim Kevin J, Ou Jing, Groszer Matthias, Imura Tetsuya, Freije William A, Nelson Stanley F, Sofroniew Michael V, Wu Hong, Liu Xin, Terskikh Alexey V, Geschwind Daniel H, Kornblum Harley I   Maternal embryonic leucine zipper kinase (MELK) regulates multipotent neural progenitor proliferation. The Journal of cell biology, 2005; 170(3): 413-27.

Lu Kan V, Jong Kimberly A, Kim Gloria Y, Singh Jatinder, Dia Ederlyn Q, Yoshimoto Koji, Wang Maria Y, Cloughesy Timothy F, Nelson Stanley F, Mischel Paul S   Differential induction of glioblastoma migration and growth by two forms of pleiotrophin. The Journal of biological chemistry, 2005; 280(29): 26953-64.

Cantor Rita M, Kono Naoko, Duvall Jackie A, Alvarez-Retuerto Ana, Stone Jennifer L, Alarcón Maricela, Nelson Stanley F, Geschwind Daniel H   Replication of autism linkage: fine-mapping peak at 17q21. American journal of human genetics, 2005; 76(6): 1050-6.

Mehrian Shai Ruty, Reichardt Juergen K V, Ya-Hsuan Hsu, Kremen Thomas J, Liau Linda M, Cloughesy Timothy F, Mischel Paul S, Nelson Stanley F   Robustness of gene expression profiling in glioma specimen samplings and derived cell lines. Brain research. Molecular brain research, 2005; 136(1-2): 99-103.

Lynn Deborah E, Lubke Gitta, Yang May, McCracken James T, McGough James J, Ishii Janeen, Loo Sandra K, Nelson Stanley F, Smalley Susan L   Temperament and character profiles and the dopamine D4 receptor gene in ADHD. The American journal of psychiatry, 2005; 162(5): 906-13.

Shen Dejun, Chang Helena R, Chen Zugen, He Jianbo, Lonsberry Victor, Elshimali Yahya, Chia David, Seligson David, Goodglick Lee, Nelson Stanley F, Gornbein Jeffrey A   Loss of annexin A1 expression in human breast cancer detected by multiple high-throughput analyses. Biochemical and biophysical research communications, 2005; 326(1): 218-27.

Stone Jennifer L, Merriman Barry, Cantor Rita M, Yonan Amanda L, Gilliam T Conrad, Geschwind Daniel H, Nelson Stanley F   Evidence for sex-specific risk alleles in autism spectrum disorder. American journal of human genetics, 2004; 75(6): 1117-23.

Le Keith, Mitsouras Katherine, Roy Meenakshi, Wang Qi, Xu Qiang, Nelson Stanley F, Lee Christopher   Detecting tissue-specific regulation of alternative splicing as a qualitative change in microarray data. Nucleic acids research, 2004; 32(22): e180.