Recombination rates in admixed individuals identified by ancestry-based inference.

TitleRecombination rates in admixed individuals identified by ancestry-based inference.
Publication TypeJournal Article
Year of Publication2011
AuthorsWegmann, D, Kessner DE, Veeramah KR, Mathias RA, Nicolae DL, Yanek LR, Sun YV, Torgerson DG, Rafaels N, Mosley T, Becker LC, Ruczinski I, Beaty TH, Kardia SLR, Meyers DA, Barnes KC, Becker DM, Freimer NB, Novembre J
JournalNature genetics
Volume43
Issue9
Pagination847-53
Date Published2011 Sep
ISSN1546-1718
KeywordsAfrican Americans, Chromosome Mapping, Haplotypes, Humans, Pedigree, Polymorphism, Single Nucleotide, Recombination, Genetic
Abstract

Studies of recombination and how it varies depend crucially on accurate recombination maps. We propose a new approach for constructing high-resolution maps of relative recombination rates based on the observation of ancestry switch points among admixed individuals. We show the utility of this approach using simulations and by applying it to SNP genotype data from a sample of 2,565 African Americans and 299 African Caribbeans and detecting several hundred thousand recombination events. Comparison of the inferred map with high-resolution maps from non-admixed populations provides evidence of fine-scale differentiation in recombination rates between populations. Overall, the admixed map is well predicted by the average proportion of admixture and the recombination rate estimates from the source populations. The exceptions to this are in areas surrounding known large chromosomal structural variants, specifically inversions. These results suggest that outside of structurally variable regions, admixture does not substantially disrupt the factors controlling recombination rates in humans.

DOI10.1042/AN20110027
Alternate JournalNat. Genet.